View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name
[info]
|
RNA_POL_II_REPEAT
|
Accession
[info]
|
PS00115
|
Entry type
[info]
|
PATTERN
|
Date
[info]
|
01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
27-MAR-2024 INFO UPDATE.
|
PROSITE Doc.
[info]
|
PDOC00106
|
Name and characterization of the entry
Description
[info]
|
Eukaryotic RNA polymerase II heptapeptide repeat.
|
Pattern
[info]
|
Y-[ST]-P-[ST]-S-P-[STANK].
|
Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.
Total number of hits
|
372 in 18 different sequences
|
Number of true positive hits
|
369 in 15 different sequences
|
Number of 'unknown' hits
|
0
|
Number of false positive hits
|
3 in 3 different sequences
|
Number of false negative sequences
|
0
|
Number of 'partial' sequences
|
0
|
|
|
Precision (true positives / (true positives + false positives))
|
99.19 %
|
Recall (true positives / (true positives + false negatives))
|
100.00 %
|
Taxonomic range
[info]
|
Eukaryotes |
Maximum number of repetitions
[info]
|
43 |
Version
[info]
|
1 |
UniProtKB/Swiss-Prot True positive sequences |
15 sequences
NRPB1_ARATH (P18616), RPB1_BOVIN (G3MZY8), RPB1_CAEBR (P35074),
RPB1_CAEEL (P16356), RPB1_CRIGR (P11414), RPB1_DICDI (P35084),
RPB1_DROME (P04052), RPB1_ENCCU (Q8SSC4), RPB1_EREGS (Q75A34),
RPB1_HUMAN (P24928), RPB1_MOUSE (P08775), RPB1_PICGU (A5DCV3),
RPB1_PLAFD (P14248), RPB1_SCHPO (P36594), RPB1_YEAST (P04050)
» more
|
UniProtKB/Swiss-Prot False positive sequences |
3 sequences
CDS3_ARATH (Q1PE48), DNLJ_THEAB (B7IDX6), RFX3_XENTR (Q0V9K5)
|
PDB [Detailed view] |
234 PDB
1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA;
1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H;
2E2I; 2E2J; 2GHQ; 2GHT; 2JA5; 2JA6; 2JA7; 2JA8; 2L0I; 2LO6; 2NVQ; 2NVT;
2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3D9K; 3D9L; 3D9M;
3D9N; 3D9O; 3D9P; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ;
3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3K1F; 3K7A;
3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M;
3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I;
4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4GWQ;
4JXT; 4PZ6; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A;
5C4J; 5C4X; 5FLM; 5FMF; 5FYW; 5FZ5; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9;
5IYA; 5IYB; 5IYC; 5IYD; 5LVF; 5M3H; 5M3J; 5M9D; 5OIK; 5OQJ; 5OQM; 5OT2;
5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF;
6DRD; 6F5P; 6GYK; 6GYL; 6GYM; 6I84; 6IC8; 6IC9; 6NPW; 6O6C; 6O9L; 6Q5Y;
6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XKB; 6XRE; 7B0Y; 7EGB; 7EGC;
7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX;
7NKY; 7O4I; 7O4J; 7O4K; 7O4L; 7O72; 7O73; 7O75; 7OKX; 7OKY; 7OO3; 7OOB;
7OOP; 7OPC; 7OPD; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIG;
7UIO; 7YCX; 7Z1K; 7Z42; 7ZS9; 7ZSA; 7ZSB; 8CEN; 8CEO; 8OEU; 8OEV; 8OEW;
8OF0; 8P4B; 8P4C; 8P4D; 8P4E; 8P4F
» more
|