PROSITE entry PS00177
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General information about the entry
Entry name [info] | TOPOISOMERASE_II |
Accession [info] | PS00177 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00160 |
Name and characterization of the entry
Description [info] | DNA topoisomerase II signature. |
Pattern [info] |
[LIVMA]-{R}-E-G-[DN]-S-A-{F}-[STAG]. |
Numerical results [info]
Total number of hits | 185 in 185 different sequences |
Number of true positive hits | 170 in 170 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 91.89 % |
Recall (true positives / (true positives + false negatives)) | 98.27 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
170 sequences
CIN4_CAEEL (G5ECQ8), GYRB1_ACILW (Q44088), GYRB2_ACILW (Q44272), GYRBM_ARATH (Q94BZ7), GYRBP_ARATH (Q9SS38), GYRBR_STRNV (P50074), GYRBS_STRNV (P50075), GYRB_ACIBA (Q43907), GYRB_ACIBZ (Q44273), GYRB_ACICA (Q43947), GYRB_ACIG6 (Q44271), GYRB_ACIGI (Q44274), GYRB_ACIHA (Q44065), GYRB_ACIJO (Q44081), GYRB_ACIJU (Q44080), GYRB_ACIPI (Q44270), GYRB_ACIS8 (Q44275), GYRB_ACIS9 (Q44276), GYRB_ACIVR (Q44277), GYRB_BACAN (Q9X3Y6), GYRB_BACCE (Q9X3Y3), GYRB_BACMY (Q9X3Y5), GYRB_BACSU (P05652), GYRB_BORBU (P33769), GYRB_BORHE (Q9ZFK1), GYRB_BUCAI (P57126), GYRB_BUCAP (P29435), GYRB_BUCBP (Q89B37), GYRB_CAMJE (O87667), GYRB_CAUVC (P0CAX1), GYRB_CAUVN (B8GXQ0), GYRB_CHIJA (Q9FAX2), GYRB_CHLMU (Q9PKK3), GYRB_CHLPN (Q9Z8R3), GYRB_CHLTR (O84193), GYRB_CLOAB (P94604), GYRB_CYTAU (Q9LCK0), GYRB_CYTHU (Q9LCK1), GYRB_ECO57 (P0AES7), GYRB_ECOLI (P0AES6), GYRB_EISEL (Q9FAX1), GYRB_ENTFA (Q839Z1), GYRB_HAEIN (P43701), GYRB_HALH5 (O50627), GYRB_HALL2 (P21558), GYRB_HALVD (D4GZ01), GYRB_HELPJ (Q9ZLX3), GYRB_HELPY (P55992), GYRB_METAT (Q9ZAQ6), GYRB_METH1 (P43053), GYRB_MICLC (C5C7X8), GYRB_MYCBP (A0A0G2Q9D6), GYRB_MYCGA (P47720), GYRB_MYCGE (P47249), GYRB_MYCLE (Q59533), GYRB_MYCPA (Q9L7L3), GYRB_MYCPN (P22447), GYRB_MYCS2 (A0QNE0), GYRB_MYCSM (P0C559), GYRB_MYCTA (A5TY73), GYRB_MYCTO (P9WG44), GYRB_MYCTU (P9WG45), GYRB_MYXXA (O33367), GYRB_NEIG1 (Q5F5Z6), GYRB_NEIGO (P22118), GYRB_NICBE (Q5YLB4), GYRB_ORYSJ (Q5NBJ3), GYRB_PSEAE (Q9I7C2), GYRB_PSEPU (P13364), GYRB_RICBR (Q1RHT8), GYRB_RICCN (Q92H87), GYRB_RICFE (Q4UKX5), GYRB_RICPR (Q9ZCX2), GYRB_RICTY (Q68WF6), GYRB_SALTI (P0A2I4), GYRB_SALTY (P0A2I3), GYRB_SHIFL (P0AES8), GYRB_SPICI (P34031), GYRB_STAA3 (Q2FKQ1), GYRB_STAAC (Q5HJZ1), GYRB_STAAM (P66936), GYRB_STAAN (P66937), GYRB_STAAR (Q6GKU0), GYRB_STAAS (Q6GD85), GYRB_STAAU (P0A0K8), GYRB_STAAW (P0A0K7), GYRB_STAEQ (Q5HK03), GYRB_STAES (Q8CQK4), GYRB_STRCO (P35886), GYRB_STRP1 (Q9A0L0), GYRB_STRP3 (P0DG04), GYRB_STRP6 (Q5XD05), GYRB_STRP8 (Q8P1M4), GYRB_STRPN (P0A4L9), GYRB_STRPQ (P0DG05), GYRB_STRR6 (P0A4M0), GYRB_SYNY3 (P77966), GYRB_THEMA (P77993), GYRB_THET8 (Q5SHZ4), GYRB_TREDE (O87545), GYRB_TREPA (O08399), GYRB_VIBCH (Q9KVX3), GYRB_VIBPA (O51859), PARE_BACSU (Q59192), PARE_BARBK (P94281), PARE_BORBU (Q59189), PARE_CAUVC (O54479), PARE_ECOLI (P20083), PARE_ENTFA (H7C794), PARE_FRATH (A0A0J9WZF0), PARE_HAEIN (P43703), PARE_MYCCT (P50028), PARE_MYCGA (Q59526), PARE_MYCGE (P47445), PARE_MYCPN (P78016), PARE_PSEAE (Q9HUJ8), PARE_RICBR (Q1RK03), PARE_RICCN (Q92IW1), PARE_RICFE (Q4UKT4), PARE_RICPR (Q9ZDU7), PARE_RICTY (Q68XE1), PARE_SALTI (P0A2I6), PARE_SALTY (P0A2I5), PARE_STAA8 (Q2FYS5), PARE_STAAC (Q5HG65), PARE_STAAM (P66938), PARE_STAAN (P66939), PARE_STAAR (Q6GH51), PARE_STAAS (Q6G9K5), PARE_STAAU (P0C1S7), PARE_STAAW (P0A0K9), PARE_STAEQ (Q5HPI6), PARE_STAES (Q8CSN9), PARE_STRPN (Q59961), TOP2A_CHICK (O42130), TOP2A_CRIGR (P41515), TOP2A_HUMAN (P11388), TOP2A_MOUSE (Q01320), TOP2A_PIG (O46374), TOP2A_RAT (P41516), TOP2B_CHICK (O42131), TOP2B_CRILO (Q64399), TOP2B_HUMAN (Q02880), TOP2B_MOUSE (Q64511), TOP2M_CAEEL (P34534), TOP2M_DICDI (P90520), TOP2_ARATH (P30182), TOP2_ASFB7 (Q00942), TOP2_ASFK5 (P0C9C2), TOP2_ASFM2 (P34203), TOP2_ASFP4 (P0C9C0), TOP2_ASFWA (P0C9C1), TOP2_BOMMO (O16140), TOP2_CAEEL (Q23670), TOP2_CANGA (O93794), TOP2_CRIFA (P27570), TOP2_DICDI (Q55BP5), TOP2_DROME (P15348), TOP2_LEICH (O61078), TOP2_MIMIV (Q5UQE6), TOP2_PEA(O24308), TOP2_PENCH (Q9Y8G8), TOP2_PLAFK (P41001), TOP2_SCHPO (P08096), TOP2_TRYBB (P12531), TOP2_TRYCR (P30190), TOP2_YEAST (P06786), TOP4B_AQUAE (O67137), TOPL_BPT4 (P09176), TOPON_MYCS2 (A0QPN2)» more
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UniProtKB/Swiss-Prot False negative sequences |
3 sequences
GYRB_ARCFU (O29720), TOP2_CANAX (P87078), TOP2_PICGU (Q01879) |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
GYRB_PROMI (P22840), GYRB_RHOCA (P31860) |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ASTD_PARXL (Q141D3), CIPK6_ORYSJ (Q6Z9F4), DDL_CUPNH (Q0K6M6), DOM_DROME (Q9NDJ2), MIC60_DEBHA (Q6BXM9), NACA_DANRE (Q8JIU7), RPOA_METCA (Q605D7), RTEL1_ORYSJ (A0A0P0V4R0), SECA_HALHL (A1WYM9), SEPT9_MOUSE (Q80UG5), SEPT9_RAT (Q9QZR6), XTH6_DIOKA (A0A067XRK9), XTH9_ARATH (Q8LDW9), Y1130_XYLFA (Q9PE98), Y419_XYLFT (Q87E99)» more |
PDB [Detailed view] |
97 PDB
1BGW; 1BJT; 2RGR; 2XCO; 2XCQ; 2XCR; 2XCS; 2XCT; 2ZJT; 3FOE; 3FOF; 3IG0; 3K9F; 3KSA; 3KSB; 3L4J; 3L4K; 3LTN; 3M4I; 3NUH; 3QX3; 3RAD; 3RAE; 3RAF; 4BUL; 4FM9; 4G0U; 4G0V; 4G0W; 4GFH; 4I3H; 4J3N; 4JUO; 4KOE; 4KPE; 4KPF; 4PLB; 4Z2C; 4Z2D; 4Z2E; 4Z3O; 4Z4Q; 4Z53; 5BS3; 5BS8; 5BTA; 5BTC; 5BTD; 5BTF; 5BTG; 5BTI; 5BTL; 5BTN; 5CDM; 5CDN; 5CDO; 5CDP; 5CDQ; 5CDR; 5GWI; 5GWJ; 5GWK; 5IWI; 5IWM; 5NPK; 5NPP; 5ZAD; 5ZEN; 5ZQF; 5ZRF; 6FM4; 6FQS; 6FQV; 6GAU; 6GAV; 6QTK; 6QTP; 6QX1; 6QX2; 6RKS; 6RKU; 6RKV; 6RKW; 6Z1A; 6ZY5; 6ZY6; 6ZY7; 6ZY8; 7FVS; 7FVT; 7MVS; 7UGW; 7Z9C; 7Z9G; 7Z9K; 7Z9M; 8BP2 » more |