PROSITE entry PS00351
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General information about the entry
Entry name [info] | TFIID |
Accession [info] | PS00351 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00303 |
Name and characterization of the entry
Description [info] | Transcription factor TFIID repeat signature. |
Pattern [info] |
Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x- [STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF]. |
Numerical results [info]
Total number of hits | 168 in 97 different sequences |
Number of true positive hits | 168 in 97 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 96.00 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes |
Maximum number of repetitions [info] | 2 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
97 sequences
TBP1_ARATH (P28147), TBP1_ENTH1 (P52653), TBP1_HALVD (D4GZA2), TBP1_MAIZE (P50158), TBP1_METAC (Q8TI26), TBP1_METMA (Q8PY37), TBP1_WHEAT (P26356), TBP2_ARATH (P28148), TBP2_ENTH1 (C4M7H7), TBP2_HALVD (D4H071), TBP2_MAIZE (P50159), TBP2_METAC (Q8TU94), TBP2_METMA (Q8PY36), TBP2_ORYSJ (Q8W0W4), TBP2_WHEAT (Q02879), TBP3_METAC (Q8TTZ7), TBP3_METMA (Q8PUZ4), TBPB_HALSA (Q48325), TBPE_HALSA (Q9HN56), TBPF_HALSA (Q9HHE9), TBPL1_ENTH1 (A7UFC2), TBPL2_DANRE (Q1JPY4), TBPL2_HUMAN (Q6SJ96), TBPL2_MOUSE (Q6SJ95), TBPL2_PANTR (A6H907), TBPL2_RAT (A6H909), TBPL2_TAKRU (Q6SJ94), TBPL2_XENLA (Q5UE94), TBPL2_XENTR (Q28DH2), TBP_ACACA (P26354), TBP_ACEPE (P46272), TBP_AERPE (Q9YAT1), TBP_ARCFU (O29874), TBP_ARTSF (O17488), TBP_BOMMO (O45211), TBP_BOVIN (Q2HJ52), TBP_CAEEL (P32085), TBP_CANAL (O43133), TBP_CHICK (O13270), TBP_DANRE (Q7SXL3), TBP_DICDI (P26355), TBP_DROME (P20227), TBP_DROVI (Q9NHP5), TBP_EMENI (Q12731), TBP_HALMA (Q5V470), TBP_HUMAN (P20226), TBP_MACFA (Q4R4F5), TBP_MESAU (P53360), TBP_MESCR (P48511), TBP_META3 (A6UTF6), TBP_METJA (Q57930), TBP_METKA (Q8TX38), TBP_METM6 (A9A840), TBP_METM7 (A6VIP7), TBP_METMP (Q6M0L3), TBP_METS3 (A5UL47), TBP_METST (Q2NFC3), TBP_METTH (O27664), TBP_METTL (Q9P9I9), TBP_METTP (A0B5H8), TBP_METVS (A6URP5), TBP_MOUSE (P29037), TBP_NATPD (Q3ITB1), TBP_PICTO (Q6L1R1), TBP_PLAFA (P32086), TBP_PROFL (Q92117), TBP_PYRAB (Q9V024), TBP_PYRAE (Q8ZVR0), TBP_PYRCJ (A3MV36), TBP_PYRFU (P62000), TBP_PYRHO (O58737), TBP_PYRIL (A1RSQ1), TBP_PYRNV (B1Y949), TBP_PYROC (P58177), TBP_PYRWO (P62001), TBP_SACS2 (P58178), TBP_SACSH (Q55031), TBP_SCHPO (P17871), TBP_SOLTU (P26357), TBP_SOYBN (Q42808), TBP_SPOFR (P53361), TBP_STRPU (P91809), TBP_SULAC (Q9UWN7), TBP_SULTO (Q971V3), TBP_TETTH (Q27850), TBP_THEAC (Q9HLM8), TBP_THECE (Q56253), TBP_THEKO (Q52366), TBP_THEON (B6YXI6), TBP_THESM (C6A0R1), TBP_THEVO (Q978J5), TBP_TOBAC (P93348), TBP_TRIGA (Q92146), TBP_XENLA (P27633), TBP_XENTR (Q28GG8), TBP_YEAST (P13393), TRF_DROME (Q27896)» more
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UniProtKB/Swiss-Prot False negative sequences |
7 sequences
TBPL1_BOVIN (Q32LB1), TBPL1_DANRE (Q5U385), TBPL1_HUMAN (P62380), TBPL1_MACFA (Q4R848), TBPL1_MOUSE (P62340), TBPL1_PONAB (Q5R7U8), TBPL1_XENTR (Q6DIY4)» more |
PDB [Detailed view] |
140 PDB
1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; 1QN5; 1QN6; 1QN7; 1QN8; 1QN9; 1QNA; 1QNB; 1QNC; 1QNE; 1RM1; 1TBA; 1TBP; 1TGH; 1VOK; 1VOL; 1VTL; 1VTO; 1YTB; 1YTF; 2Z8U; 4B0A; 4ROC; 4ROD; 4ROE; 4V1N; 4V1O; 5FMF; 5FUR; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5N9G; 5OQJ; 5OQM; 5SVA; 6CNB; 6CNC; 6CND; 6CNF; 6E16; 6E24; 6EU0; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6MZD; 6MZL; 6MZM; 6NJQ; 6O9L; 6TBM; 6UEO; 6UEP; 6UEQ; 6UER; 7EDX; 7EG7; 7EG8; 7EG9; 7EGA; 7EGB; 7EGC; 7EGD; 7EGE; 7EGF; 7EGI; 7EGJ; 7ENA; 7ENC; 7LBM; 7ML0; 7ML1; 7ML2; 7ML4; 7NVR; 7NVS; 7NVT; 7NVU; 7NVY; 7NVZ; 7NW0; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OH9; 7OHA; 7OHB; 7Q5B; 7Z0O; 7ZS9; 7ZSA; 7ZSB; 7ZWC; 7ZWD; 7ZX7; 7ZX8; 7ZXE; 8BVW; 8BYQ; 8BZ1; 8FFZ; 8GXQ; 8GXS; 8H5B; 8ITY; 8IUE; 8IUH; 8WAK; 8WAL; 8WAN; 8WAO; 8WAP; 8WAQ; 8WAR; 8WAS » more |