PROSITE entry PS00622
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General information about the entry
Entry name [info] | HTH_LUXR_1 |
Accession [info] | PS00622 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00542 |
Name and characterization of the entry
Description [info] | LuxR-type HTH domain signature. |
Pattern [info] |
[GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)- [NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR]. |
Numerical results [info]
Total number of hits | 188 in 188 different sequences |
Number of true positive hits | 173 in 173 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 77 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 92.02 % |
Recall (true positives / (true positives + false negatives)) | 69.20 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
173 sequences
AGMR_PSEAE (P29369), AGMR_PSEPU (A8R3T0), ANOR_ACINO (A0A0N8YGA2), BVGA_BORBR (P0A4H3), BVGA_BORPA (P0A4H4), BVGA_BORPE (P0A4H2), CARR_PECCC (Q46751), CMPA_BACSU (P14204), CSGD_ECOLI (P52106), CSGD_SALTY (O54294), DCTR_RHOCA (P37740), DEGU_BACSU (P13800), DEGU_BREBE (P54662), DEVR_MYCTO (P9WMF8), DEVR_MYCTU (P9WMF9), ECHR_DICCH (Q46967), ECNR_CITFR (O69280), ESAR_PANSE (P54293), EVGA_ECO57 (P0ACZ6), EVGA_ECOL6 (P0ACZ5), EVGA_ECOLI (P0ACZ4), EVGA_SHIFL (P0ACZ7), EXPR_DICD3 (Q47188), EXPR_PECPM (Q47189), FIMZ_ECO57 (P0AEL9), FIMZ_ECOLI (P0AEL8), FIMZ_SALTY (P26319), FIXJ_AZOC5 (P26487), FIXJ_BRADU (P23221), FIXJ_RHIME (P10958), GACA_PSEAE (Q51373), GACA_PSEPH (P32967), GACA_PSEU2 (Q52376), GACA_PSEVI (P95582), GERE_BACSU (P11470), LASR_PSEAE (P25084), LIAR_BACSU (O32197), LNRK_BACSU (P94439), LUXR_ALIFS (P12746), LUXS_ALIF1 (P35327), MALT_CITK8 (A8AQX2), MALT_CROS8 (A7ME76), MALT_ECO24 (A7ZSU8), MALT_ECO27 (B7UKC3), MALT_ECO45 (B7MDP4), MALT_ECO55 (B7L4U8), MALT_ECO57 (Q8X701), MALT_ECO5E (B5YTW9), MALT_ECO7I (B7NMI3), MALT_ECO81 (B7N1J6), MALT_ECO8A (B7M2H9), MALT_ECOBW (C4ZVX0), MALT_ECODH (B1X764), MALT_ECOHS (A8A5M7), MALT_ECOK1 (A1AGU2), MALT_ECOL5 (Q0TC49), MALT_ECOL6 (Q8CXX5), MALT_ECOLC (B1IP47), MALT_ECOLI (P06993), MALT_ECOLU (B7NE23), MALT_ECOSE (B6I2Y2), MALT_ECOSM (B1LI79), MALT_ECOUT (Q1R5L6), MALT_ENT38 (A4WFK6), MALT_ESCF3 (B7LSC1), MALT_KLEP3 (B5XTR7), MALT_KLEP7 (A6TF41), MALT_PHOLL (Q7N976), MALT_SALA4 (B5F8N2), MALT_SALAR (A9MMA9), MALT_SALCH (Q57IV9), MALT_SALDC (B5FKD6), MALT_SALEP (B5R375), MALT_SALG2 (B5R7J9), MALT_SALHS (B4TKU2), MALT_SALNS (B4SVL9), MALT_SALPA (Q5PM00), MALT_SALPB (A9MTT7), MALT_SALPK (B5BHH3), MALT_SALSV (B4TY75), MALT_SALTI (Q8Z227), MALT_SALTY (Q8ZLI3), MALT_SERP5 (A8GKU0), MALT_SHIBS (Q31VL4), MALT_SHIF8 (Q0SZP7), MALT_SHISS (Q3YWK7), MALT_VIBC1 (A7N5N6), MALT_VIBCH (Q9KNF3), MALT_VIBPA (Q87FQ5), MALT_VIBVU (Q8D4P3), MALT_VIBVY (Q7MG94), MALT_YERE8 (A1JSF2), MALT_YERP3 (A7FNW4), MALT_YERPA (Q1C2L4), MALT_YERPB (B2K5W2), MALT_YERPE (Q8ZJI2), MALT_YERPP (A4TGR4), MALT_YERPS (Q664J3), MALT_YERPY (B1JHZ0), MOAR_KLEAE (P54794), NARL_ECO57 (P0AF30), NARL_ECOL6 (P0AF29), NARL_ECOLI (P0AF28), NARL_SHIFL (P0AF31), NARP_ECOLI (P31802), NARP_HAEIN (P44845), NODW_BRADU (P15940), NREC_STAA1 (A7X623), NREC_STAA2 (A6U4C0), NREC_STAA3 (Q2FEA6), NREC_STAA8 (Q2FVM7), NREC_STAA9 (A5IVH2), NREC_STAAB (Q2YZ42), NREC_STAAC (Q5HDG5), NREC_STAAE (A6QJN1), NREC_STAAM (Q99RN8), NREC_STAAN (Q7A3U5), NREC_STAAR (Q6GE42), NREC_STAAS (Q6G6T0), NREC_STAAT (A8Z580), NREC_STAAW (Q7A029), NREC_STACT (Q7WZY4), NREC_STAEQ (Q5HLK6), NREC_STAES (Q8CN75), NREC_STAHJ (Q4L8Q6), PHZR_PSECL (P54303), PHZR_PSEFL (Q51786), RCSA_ECO57 (P69406), RCSA_ECOLI (P0DMC9), RCSA_ECOLX (P0DMD0), RCSA_ERWAM (P20098), RCSA_KLEAE (P05338), RCSA_PANSE (P27488), RCSA_SALTI (Q56083), RCSA_SALTY (P54698), RCSB_ECO57 (P69409), RCSB_ECOL6 (P69408), RCSB_ECOLI (P0DMC7), RCSB_ECOLX (P0DMC8), RCSB_SALTI (Q56127), RCSB_SALTY (P58663), RCSB_SHIFL (P69410), RHIR_RHILV (Q03316), RHLR_PSEAE (P54292), SDIA_ECOLI (P07026), SGAR_HYPME (P56644), SOLR_RALN1 (P58590), SOLR_RALSL (O30919), TDIR_THAAR (O87940), THAA_BURTA (Q2T4M4), TRPO_PSEAE (P24908), TTRR_SALTY (Q7CQM8), UHPA_ECO57 (P0AGA8), UHPA_ECOL6 (P0AGA7), UHPA_ECOLI (P0AGA6), UHPA_SALTY (P27667), UHPA_SHIFL (P0AGA9), UVRY_ECO57 (P66798), UVRY_ECOL6 (P66797), UVRY_ECOLI (P0AED5), UVRY_SHIFL (P0AED6), Y4QH_SINFN (P55629), Y890_MYCTO (P9WMG0), Y890_MYCTU (P9WMG1), Y914_MYCBO (P59969), YDFI_BACSU (P96686), YENR_YEREN (P54295), YEXN_AERSA (P45785), YGEK_ECO57 (P58664), YGEK_ECOLI (Q46791), YHCZ_BACSU (O07528), YHJB_ECOLI (P37640), YXJL_BACSU (P55184)» more
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UniProtKB/Swiss-Prot False negative sequences |
77 sequences
AHYR_AERHY (P0A3J5), ALKS_ALCBS (Q0VKZ4), ALKS_PSEOL (P17051), ALKS_PSEPU (Q9L4M7), ASAR_AERSA (P0A3J6), BGLJ_ECOLI (P39404), BJAR1_BRADU (Q89VI3), BRPA_STRHY (Q01108), DCTR_ECO57 (Q8X5P3), DCTR_ECOL6 (Q8FCK2), DCTR_ECOLI (P37195), DCTR_SHIFL (Q83J60), DESR_BACSU (O34723), ECPR_ECO24 (A7ZI28), ECPR_ECO27 (B7UJE2), ECPR_ECO55 (B7L425), ECPR_ECO57 (Q8X6I1), ECPR_ECO5E (B5Z1N3), ECPR_ECO81 (B7MP71), ECPR_ECODH (B1XE36), ECPR_ECOHS (A7ZWT2), ECPR_ECOK1 (A1A7X7), ECPR_ECOKI (Q9AME2), ECPR_ECOL5 (Q0TKZ0), ECPR_ECOL6 (Q8FKL2), ECPR_ECOLC (B1J0X8), ECPR_ECOLI (P71301), ECPR_ECOLU (B7N8J2), ECPR_ECOSE (B6I082), ECPR_ECOSM (B1LHW0), ECPR_ECOUT (Q1RFQ3), ECPR_KLEP3 (B5Y159), ECPR_KLEP7 (A6T571), ECPR_SHIBS (Q325R5), EXAE_PSEPU (A8R3S7), GADE_ECO57 (P63206), GADE_ECOL6 (P63205), GADE_ECOLI (P63204), GADE_SHIFL (P63207), MCTR_RHIJ3 (Q1M7A0), MOXX_PARDE (P29904), NARL_MYCTO (P9WGM4), NARL_MYCTU (P9WGM5), RAIR_RHIET (O54452), RPAR_RHOPA (Q6NCZ5), TMOT_PSEME (Q8KR08), TODT_PSEP1 (A5W4E2), TODT_PSEPT (I7CA98), TODT_PSEPU (Q3LWR6), TRAR_AGRFC (P54294), TRAR_AGRVI (P33909), TRAR_RHIRD (P33905), TRAR_SINFN (P55407), VANR_VIBAN (P74946), VJBR_BRUA2 (Q2YJ50), VJBR_BRUAB (Q579W9), VJBR_BRUME (Q8YAY5), VJBR_BRUO2 (A5VTN1), VJBR_BRUSU (Q8FXF9), VRAR_STAA1 (P0C0Z1), VRAR_STAAC (Q5HEP0), VRAR_STAAM (Q7A2Q1), VRAR_STAAN (Q7A4R9), VRAR_STAAR (Q6GFH3), VRAR_STAAS (Q6G850), VRAR_STAAW (Q7A0I0), VRAR_STAEQ (Q5HN50), VRAR_STAES (Q8CNP9), VRAR_STAHJ (Q4L7J5), VRAR_STAS1 (Q49YS9), YCF29_CYAPA (P48359), YCF29_GUITH (O78417), YCF29_NEOYE (Q1XDE4), YCF29_PORPU (P51343), YJJQ_ECOLI (P0ADD7), YUAB_ECOLI (Q9JMT8), YUKR_YERRU (O87971)» more |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ANS1B_DANRE (A5PMU4), GLMU_STAA3 (Q2FJE2), GLMU_STAA8 (Q2G0S3), GLMU_STAAB (Q2YVU6), GLMU_STAAC (Q5HIH6), GLMU_STAAM (Q99WA4), GLMU_STAAN (Q7A7B4), GLMU_STAAR (Q6GJH2), GLMU_STAAS (Q6GBY9), GLMU_STAAW (Q8NXZ7), K1549_HUMAN (Q9HCM3), K1549_MOUSE (Q68FD9), RPSH_BACLI (P02964), RPSH_BACSU (P17869), Y170_LACJO (P60951)» more |
PDB [Detailed view] |
38 PDB
1A04; 1FSE; 1JE8; 1RNL; 1X3U; 1ZG1; 1ZG5; 1ZLJ; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ; 4LFU; 4LGW; 5F64; 5O8Y; 5O8Z; 5VXN; 5W43; 6EO2; 6EO3; 6MWH; 6MWL; 6MWW; 6MWZ; 6V7W; 6V7X; 6ZIX; 6ZJ2; 7R3E; 7R3G; 7R3H; 7R3I; 7R3J; 8B4A; 8DQ0; 8DQ1 » more |