PROSITE entry PS00688
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General information about the entry
Entry name [info] | SIGMA54_INTERACT_3 |
Accession [info] | PS00688 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-JUN-1994 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00579 |
Name and characterization of the entry
Description [info] | Sigma-54 interaction domain C-terminal part signature. |
Pattern [info] |
[FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT]. |
Numerical results [info]
Total number of hits | 142 in 142 different sequences |
Number of true positive hits | 142 in 142 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 13 |
Number of 'partial' sequences | 4 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 91.61 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
142 sequences
ACOR_BACSU (O31551), ACOR_CUPNH (P28614), ALGB_PSEAE (P23747), ALGB_PSEPK (Q88RJ6), ALGB_PSESM (Q88AQ2), ANFA_AZOVI (P12626), ATOC_ECOLI (Q06065), DCTD_PSEAE (Q9HU19), DCTD_RHILE (P10046), DCTD_RHIME (P13632), FHLA_ECOLI (P19323), FHLA_SALTS (E1WAA4), FHLA_SALTY (P0CL46), FLBD_CAUVC (P17899), FLEQ_PSEAE (G3XCV0), FLER_PSEAE (Q9I4N3), GLRR_ECOLI (P0AFU4), HOXA_BRADU (P31908), HOXA_CUPNH (P29267), HRPS_PSESH (P26316), HRPS_PSESY (P37931), HUPR_RHOCA (P26408), HYFR_ECOLI (P71229), LIHY_GEOSE (O85057), LUXO_VIBC1 (A7MVC2), LUXO_VIBC3 (O87455), LUXO_VIBCH (Q9KT84), LUXO_VIBHA (P0C5S5), LUXO_VIBPA (Q87MX7), LUXO_VIBVU (Q8CWJ5), LUXO_VIBVY (Q7MM78), MOPR_ACIGI (Q43965), NIFA_AZOBR (P30667), NIFA_AZOC5 (P09133), NIFA_AZOLI (P54929), NIFA_AZOVI (P09570), NIFA_BRADU (P05407), NIFA_ENTAG (P54930), NIFA_HERSE (P27713), NIFA_KLEOX (P56266), NIFA_KLEPN (P03027), NIFA_RHIEC (P54931), NIFA_RHILE (P09828), NIFA_RHILT (P24426), NIFA_RHIME (P03028), NIFA_RHOCA (P0CY94), NIFA_RHOCB (D5ARW9), NIFA_SINFN (Q53206), NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERHH (A0KEJ0), NORR_AERS4 (A4STH5), NORR_ALIF1 (Q5E3W8), NORR_CITK8 (A8ANR6), NORR_ECO24 (A7ZQD8), NORR_ECO27 (B7UHC1), NORR_ECO45 (B7MKH8), NORR_ECO55 (B7LEC0), NORR_ECO57 (Q8X854), NORR_ECO5E (B5Z370), NORR_ECO7I (B7NSI9), NORR_ECO81 (B7MZ04), NORR_ECO8A (B7M9E6), NORR_ECOBW (C4ZYV4), NORR_ECODH (B1XCN6), NORR_ECOHS (A8A3I6), NORR_ECOK1 (A1AEP9), NORR_ECOL5 (Q0TEH1), NORR_ECOL6 (Q8FEN6), NORR_ECOLC (B1IUX0), NORR_ECOLI (P37013), NORR_ECOLU (B7N6T9), NORR_ECOSE (B6I695), NORR_ECOSM (B1LQ27), NORR_ECOUT (Q1R7Z1), NORR_ENT38 (A4WDR5), NORR_ESCF3 (B7LW25), NORR_KLEP3 (B5XVA2), NORR_KLEP7 (A6TCX4), NORR_PECAS (Q6D8R9), NORR_SALA4 (B5F363), NORR_SALAR (A9MFX7), NORR_SALCH (Q57KT4), NORR_SALDC (B5FSZ0), NORR_SALEP (B5QV88), NORR_SALG2 (B5RDG4), NORR_SALHS (B4TF23), NORR_SALNS (B4T3B0), NORR_SALPA (Q5PF20), NORR_SALPB (A9N0D7), NORR_SALPC (C0PWN2), NORR_SALSV (B4TT16), NORR_SALTI (Q8Z4C6), NORR_SALTY (Q8ZMJ8), NORR_SERP5 (A8GG93), NORR_SHIBS (Q31X73), NORR_SHIDS (Q32CL9), NORR_SHIF8 (Q0T1D4), NORR_SHIFL (P59402), NORR_SHISS (Q3YYF5), NORR_VIBVU (Q8D4F9), NORR_VIBVY (Q7MFY9), NTRC_AZOBR (P45671), NTRC_AZOC5 (Q04848), NTRC_BRASR (P10576), NTRC_ECO57 (P0AFB9), NTRC_ECOLI (P0AFB8), NTRC_KLEPN (P03029), NTRC_RHIME (P10577), NTRC_RHOCB (P09432), NTRC_SALTY (P41789), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), NTRX_AZOC5 (Q04849), PGTA_SALTY (P06184), PILR_PSEAE (Q00934), PRPR_ECOLI (P77743), PRPR_SALTY (P74839), PSPF_ECOLI (P37344), QSEF_ECO57 (P0AFU5), ROCR_BACSU (P38022), SFNR_PSEPF (Q3K999), SFNR_PSEPU (Q845S7), STC_CLOBE (P26047), TYRR_ECOLI (P07604), TYRR_ENTAG (Q9ZIB7), TYRR_SALTI (P0A2D8), TYRR_SALTY (P0A2D7), UACR_ECOLI (Q46802), VASH_VIBCH (Q9KN48), VNFA_AZOVI (P12627), WTSA_PANSE (P36219), XYLR_PSEPU (P06519), YQIR_BACSU (P54529), ZRAR_ECO57 (Q8X613), ZRAR_ECOLI (P14375), ZRAR_KLEOX (Q9APD9), ZRAR_SALTI (Q8Z333), ZRAR_SALTY (P25852)» more
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UniProtKB/Swiss-Prot False negative sequences |
13 sequences
DGAR_SALT1 (D0ZLR9), DHAR_CITFR (P45512), DHAR_ECOLI (P76016), HRPR_PSESY (P37930), LEVR_BACSU (P23914), MIMR_MYCGD (G3XGC1), MIMR_MYCS2 (A0QTU7), NTRC_PROHU (P28787), RTCR_ECOLI (P38035), TYRR_CITBR (O54426), TYRR_HAEIN (P44694), Y4PA_SINFN (P55610), YPLP_BACSU (P54156)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
NIFA_AZOCH (P56269), NTRC_VIBAL (P19905), YFHA_KLEOX (P21710), YHYA_PSESN (Q01265)» more |
PDB [Detailed view] |
20 PDB
1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2VII; 4QNM; 4QNR; 4QOS; 5EXP; 5EXS; 5EXT; 5EXX; 5NSS; 6J7E; 6JDI; 6JDL; 7EJW; 7QV9 » more |