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PROSITE entry PS01045


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General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_2
Accession [info] PS01045
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
24-JAN-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 2.
Pattern [info]
[LIVM]-G-x(3)-Q-x(2,3)-[ND]-[IFL]-x-[RE]-D-[LIVMFY]-x(2)-[DE]-x(4,7)-R-x-
[FY]-x-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_01 which contains 570'830 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 18
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.18 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

BSS_BOTBR   (Q9SDW9), CLZ20_COCLU (A0A345BJQ0), CRIT_STRCO  (Q9ACU1), 
CRTB_CERS4  (P54905), CRTB_ENTAG  (D5KXJ0), CRTB_MYCBO  (P65861), 
CRTB_MYCTO  (P9WHP2), CRTB_MYCTU  (P9WHP3), CRTB_PANAN  (P21683), 
CRTB_PARSN  (P54975), CRTB_PSEVU  (P22872), CRTB_RHOCB  (P17056), 
CRTB_STRGR  (P54977), CRTB_SYNE7  (P37269), CRTB_SYNY3  (P37294), 
CRTB_THET2  (P37270), CRTY_ARTPT  (O07333), ERG9_ASPFU  (Q4WAG4), 
ERG9_CANAL  (A0A1D8PI71), ERG9_CANAX  (P78589), ERG9_GANLU  (A0SJQ5), 
ERG9_SCHPO  (P36596), ERG9_YEAST  (P29704), FDFT1_ARATH (P53799), 
FDFT_BOVIN  (Q32KR6), FDFT_CANGA  (Q9HGZ6), FDFT_CYBJA  (O74165), 
FDFT_DICDI  (Q54DR1), FDFT_EREGS  (Q752X9), FDFT_HUMAN  (P37268), 
FDFT_MOUSE  (P53798), FDFT_NEUCR  (Q7S4Z6), FDFT_NICBE  (P53800), 
FDFT_PONAB  (Q5R6U3), FDFT_RAT(Q02769), FDFT_USTMA  (Q92459), 
FDFT_YARLI  (Q9Y753), HPND_RHOPA  (Q6N3F2), HPND_SINFN  (P55350), 
HPND_ZYMMO  (H2VFR7), LCPS_ARTGP  (E4UPP6), LCPS_BLATR  (Q67GH9), 
LCPS_COLGM  (E3Q717), LCPS_GIBF5  (S0EQ07), LCPS_GIBFU  (Q8X0Z1), 
LCPS_LEPMJ  (E4ZUB5), LCPS_MUCCL  (Q9UUQ6), LCPS_NEUCR  (P37295), 
LCPS_PHANO  (Q0V6M5), LCPS_PHARH  (Q7Z859), LCPS_PHYB8  (Q9P854), 
LCPS_PODAN  (B2ATB0), LCPS_PYRTR  (B2WAQ3), LCPS_SORMK  (D1Z4K7), 
LCPS_SPORE  (E6ZZ11), LCPS_TRIVH  (D4D802), LCPS_USTMA  (Q4P0S6), 
LOS_BOTBR   (A0A142ZC57), LSS_BOTBR   (A0A144YEA5), MFR6_PHOSM  (A0A3G1DJL2), 
PSY1_MAIZE  (P49085), PSY1_ORYSJ  (Q5Z5B7), PSY1_SOLLC  (P08196), 
PSY2_MAIZE  (Q6EI12), PSY2_ORYSJ  (Q2QLV9), PSY2_SOLLC  (P37273), 
PSY3_MAIZE  (B0KZ40), PSY3_ORYSJ  (B6UV92), PSY_ARATH   (P37271), 
PSY_CAPAN   (P37272), PSY_CUCME   (P49293), PSY_DAUCA   (Q9SSU8), 
PSY_NARPS   (P53797), PSY_ONCHC   (Q52QW5), SLSS_SOLLC  (D0VFU8), 
SQS10_PANGI (A0A1P7Y0A2), SQS11_PANGI (A0A1P7Y0D4), SQS12_PANGI (A0A1P7Y0A8), 
SQS13_PANGI (A0A1P7Y0D0), SQS1_PANGI  (O48666), SQS2_PANGI  (C9E894), 
SQS3_PANGI  (D2K762), SQS8_PANGI  (A0A1P7Y0C9)
» more

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

BOCS_BOTBR  (G0Y288), BOSS_BOTBR  (G0Y287), CRTM_STAA3  (Q2FDU5), 
CRTM_STAA8  (Q2FV59), CRTM_STAAB  (Q2YWE7), CRTM_STAAC  (Q5HCY8), 
CRTM_STAAE  (O07854), CRTM_STAAM  (Q99R75), CRTM_STAAN  (Q7A3E1), 
CRTM_STAAS  (Q6G6B2), CRTM_STAAU  (A9JQL9), CRTM_STAAW  (Q8NUQ5), 
CRTM_STAHJ  (Q4L976), HPNC_RHOPA  (Q6N3F1), HPNC_SINFN  (P55351), 
HPNC_ZYMMO  (Q5NP67), PSDS_BOTBR  (G0Y286), YISP_BACSU  (O06728)
» more

PDB
[Detailed view]
26 PDB

1EZF; 3ASX; 3LEE; 3Q2Z; 3Q30; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA
» more