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PROSITE entry PS01094


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General information about the entry

Entry name [info] UPF0076
Accession [info] PS01094
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-JUL-1999 DATA UPDATE;
27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00838

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0076 signature.
Pattern [info]
[PA]-[ASTPV]-R-[SACVF]-x-[LIVMFY]-x(2)-[GSAKR]-x-[LMVA]-x(5,8)-[LIVM]-
E-[MI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.


Total number of hits 105 in 105 different sequences
Number of true positive hits 85 in 85 different sequences
Number of 'unknown' hits 0
Number of false positive hits 20 in 20 different sequences
Number of false negative sequences 27
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 80.95 %
Recall (true positives / (true positives + false negatives)) 75.89 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
85 sequences

ALDR_LACLA  (O34133), DFRA_MYXXA  (O52178), HMF1_YEAST  (P40037), 
MMF1_SCHPO  (O43003), MMF1_YEAST  (P40185), RIDA_ARATH  (Q94JQ4), 
RIDA_BACSU  (P37552), RIDA_BOVIN  (Q3T114), RIDA_CAPHI  (P80601), 
RIDA_DERFA  (A0A1J1DL12), RIDA_ECOL6  (P0AF94), RIDA_ECOLI  (P0AF93), 
RIDA_HUMAN  (P52758), RIDA_MOUSE  (P52760), RIDA_PYRFU  (Q8U308), 
RIDA_RAT(P52759), RIDA_SALTY  (Q7CP78), RIDA_SHIFL  (P0AF95), 
RUTC_CROS8  (A7ME54), RUTC_CROTZ  (C9Y0S5), RUTC_ECO10  (C8U5H2), 
RUTC_ECO1A  (C8UMM6), RUTC_ECO24  (A7ZKB5), RUTC_ECO26  (C8TNC0), 
RUTC_ECO27  (B7UNZ3), RUTC_ECO44  (D3H123), RUTC_ECO45  (B7MIF7), 
RUTC_ECO55  (B7LFC0), RUTC_ECO57  (Q8XAU5), RUTC_ECO7I  (B7NLB6), 
RUTC_ECO81  (B7MTF3), RUTC_ECO8A  (B7M8Z5), RUTC_ECOBD  (C6EHJ7), 
RUTC_ECOBR  (C6UFC1), RUTC_ECOBW  (C4ZQD8), RUTC_ECOCB  (D3QPK3), 
RUTC_ECOD1  (C9QZ66), RUTC_ECODH  (B1X9D1), RUTC_ECOHS  (A7ZYW5), 
RUTC_ECOK1  (A1A9R5), RUTC_ECOKI  (D5CZH0), RUTC_ECOL5  (Q0TJ57), 
RUTC_ECOL6  (P0AFQ6), RUTC_ECOLC  (B1IV87), RUTC_ECOLI  (P0AFQ5), 
RUTC_ECOLU  (B7N3G6), RUTC_ECOS5  (D2NGI7), RUTC_ECOSE  (B6I986), 
RUTC_ECOSM  (B1LIZ5), RUTC_ECOUT  (Q1RDK7), RUTC_ENT38  (A4W923), 
RUTC_ENTCC  (D5CE34), RUTC_KLEP3  (B5XXN2), RUTC_KLEP7  (A6T7A0), 
RUTC_KLEVT  (D3RKL2), RUTC_PANAM  (D4GEU6), RUTC_SHIDS  (Q32HQ1), 
RUTC_SHIF2  (D2AC41), RUTC_SHIF8  (Q0T624), RUTC_SHIFL  (Q83LK7), 
RUTC_YERE8  (A1JMX4), TDCF_ECOL6  (P0AGL3), TDCF_ECOLI  (P0AGL2), 
TDCF_SHIFL  (P0AGL4), UK114_DROME (Q9V3W0), Y1251_PYRAB (Q9UZA3), 
Y142_LEUMC  (P97117), Y1466_PASMU (Q9L6B5), Y1627_HAEIN (P71394), 
Y3206_SACS2 (Q97U19), Y322_HAEDU  (O30825), Y334_BUCBP  (Q89AG0), 
Y364_AQUAE  (O66689), Y4SK_SINFN  (P55654), Y709_SYNY3  (P52761), 
Y719_HAEIN  (P44839), Y811_SULTO  (Q973T6), Y854_PYRHO  (O58584), 
Y944_HELPJ  (Q9ZKQ6), Y944_HELPY  (O25598), YOAB_ECOL6  (P0AEB8), 
YOAB_ECOLI  (P0AEB7), YOAB_SHIFL  (P0AEB9), YSD2_CAEEL  (Q10121), 
YVN1_AZOVI  (P40431)
» more

UniProtKB/Swiss-Prot
False negative sequences
27 sequences

DPH6_SCHPO  (Q9USQ7), DPH6_YEAST  (Q12429), MMF2_SCHPO  (Q9UR06), 
RUTC_ACIAD  (Q6FFZ5), RUTC_AGRFC  (Q7CWX2), RUTC_AZOC5  (A8IAD2), 
RUTC_CAUSK  (B0SW61), RUTC_CAUST  (D5VGV2), RUTC_CAUVC  (Q9A4N4), 
RUTC_CAUVN  (B8H1Q2), RUTC_HALO1  (D0LI57), RUTC_METC4  (B7KWT5), 
RUTC_METEA  (C5B0U7), RUTC_METED  (C7CM34), RUTC_METEP  (A9W3H9), 
RUTC_METPB  (B1ZB17), RUTC_METRJ  (B1M5I6), RUTC_PSE14  (Q48MQ6), 
RUTC_PSEU2  (Q4ZXR9), RUTC_RHIR8  (B9JLT7), RUTC_SERP5  (A8GCT4), 
RUTC_STUS1  (A4VQH6), RUTC_VARPS  (C5CN81), UK114_CHICK (P83145), 
Y359_BUCAP  (Q8K9H7), Y371_BUCAI  (P57452), YJGH_ECOLI  (P39332)
» more

UniProtKB/Swiss-Prot
False positive sequences
20 sequences

ATPFD_MYCLB (B8ZR39), ATPFD_MYCLE (P53006), CCL_CHLAA   (A9WGE2), 
CYF_PROM1   (A2C0R8), CYF_PROMT   (Q46GW2), PB2_I30A0   (P26113), 
PB2_I61A1   (B3EUR6), PB2_I67A2   (A8C8X3), PB2_I77AC   (P26114), 
POLS_ABPVR  (Q9DSN8), SYE_BIFAA   (A0ZZS4), SYE_BIFLD   (B3DU87), 
SYE_BIFLO   (Q8G709), SYE_CUTAK   (Q6A6M1), SYE_FRASN   (A8LCV4), 
SYE_STRAW   (Q82JR3), SYE_STRGG   (B1VZ06), SYE_THEYD   (B5YIG1), 
TRPE2_HALMA (Q5V213), TRPE_HALVD  (P33975)
» more

PDB
[Detailed view]
17 PDB

1J7H; 1JD1; 1NQ3; 1ONI; 1QAH; 1QD9; 1QU9; 1X25; 2DYY; 2UYJ; 2UYK; 2UYN; 2UYP; 3QUW; 3V4D; 5HP7; 5HP8
» more