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PROSITE entry PS01137


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General information about the entry

Entry name [info] TATD_1
Accession [info] PS01137
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE;
27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00836

Name and characterization of the entry

Description [info] TatD deoxyribonuclease family signature 1.
Pattern [info]
[LIVMFY](2)-D-[STA]-H-x-H-[LIVMFP]-[DN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.


Total number of hits 28 in 28 different sequences
Number of true positive hits 19 in 19 different sequences
Number of 'unknown' hits 0
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 32
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 67.86 %
Recall (true positives / (true positives + false negatives)) 37.25 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
19 sequences

DTD3_SYNY3  (P73335), TATD2_HUMAN (Q93075), TATD_MYCTU  (O08343), 
Y009_MYCGE  (P47255), Y009_MYCPN  (P78005), Y017_UREPA  (Q9PRC8), 
Y081_HAEIN  (P44500), Y1664_HAEIN (P45305), Y325_BUCBP  (Q89AG7), 
Y343_BUCAP  (Q8K9J1), Y355_BUCAI  (P57436), Y454_HAEIN  (P44718), 
Y761_METJA  (Q58171), YABD_BACSU  (P37545), YCFH_ECO57  (P0AFQ9), 
YCFH_ECOL6  (P0AFQ8), YCFH_ECOLI  (P0AFQ7), YJJV_ECOLI  (P39408), 
YMES_GEOSE  (P23918)
» more

UniProtKB/Swiss-Prot
False negative sequences
32 sequences

TATD1_ENCCU (Q8SW70), TATD1_ENTBH (B7XJI2), TATD1_VAIC1 (C4VAS3), 
TATD_CITK8  (A8ACY8), TATD_CITRI  (D2TUZ4), TATD_CROS8  (A7MQN1), 
TATD_CROTZ  (C9XTA5), TATD_DICD3  (E0SLH6), TATD_ECOLI  (P27859), 
TATD_EDWTE  (D0Z9R0), TATD_ENT38  (A4WFX9), TATD_ENTLS  (E3G381), 
TATD_ERWAE  (D4ICL5), TATD_ERWBE  (D8MKW4), TATD_ERWT9  (B2VG45), 
TATD_ESCF3  (B7LTZ5), TATD_KLEP3  (B5XYH5), TATD_MUSP7  (C6C4V4), 
TATD_PANAM  (D4GGR2), TATD_PANSA  (E6WHK1), TATD_PANVC  (E1SKR8), 
TATD_PECAS  (Q6DAQ1), TATD_PECCP  (C6DI71), TATD_PECPW  (D0KC77), 
TATD_RAHSY  (E8XYF5), TATD_SALTY  (Q9L6M2), TATD_SERP5  (A8G8C4), 
TATD_SHIF8  (Q0SZ31), TATD_YERPY  (B1JP69), Y1582_METJA (Q58977), 
YBF5_YEAST  (P34220), YNF8_SCHPO  (Q9UUF1)
» more

UniProtKB/Swiss-Prot
False positive sequences
9 sequences

ADEC_LACDA  (Q1G825), ALLB_STRAW  (Q82LL4), ALLB_STRCO  (Q9RKU5), 
ALN1_DICDI  (Q54SV3), ALN2_DICDI  (Q55C91), ALN_YEAST   (P32375), 
ATZC_PSESD  (O52063), NOD2_MOUSE  (Q8K3Z0), RDRP_BMV(P03594)
» more

PDB
[Detailed view]
2 PDB

1YIX; 1ZZM