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PROSITE entry PS01037


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General information about the entry

Entry name [info] SBP_BACTERIAL_1
Accession [info] PS01037
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00796

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 1 signature.
Pattern [info] 
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-
[LIVMF]-x-[KNDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.


Total number of hits 52 in 52 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 53
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 75.00 %
Recall (true positives / (true positives + false negatives)) 42.39 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 39 sequences 

FBPA_HAEIN  (P35755), FBPA_NEIMA  (P0A0Y3), FBPA_NEIMB  (P0A0Y4), 

FBPA_SERMA  (P21408), FBP_NEIGO   (P17259), MALE_ECO57  (P0AEY0), 
MALE_ECOLI  (P0AEX9), MALE_KLEAE  (P18815), MALE_PYRAB  (Q9V297), 
MALE_PYRFU  (P58300), MALE_SALTY  (P19576), MALX_STRPN  (P59213), 
MALX_STRR6  (P59214), MSME_STRMU  (Q00749), THIB_ECOLI  (P31550), 
THIB_HAEIN  (P44984), THIB_SALTY  (Q7CR85), UGPB_ECO57  (P0AG81), 
UGPB_ECOK1  (A1AGY4), UGPB_ECOL5  (Q0TC07), UGPB_ECOL6  (Q8CVL9), 
UGPB_ECOLI  (P0AG80), UGPB_ECOUT  (Q1R5H5), UGPB_PECAS  (Q6CZ31), 
UGPB_SALCH  (Q57IS0), UGPB_SALPA  (Q5PJK8), UGPB_SALTI  (Q8XG55), 
UGPB_SALTY  (Q7CPK0), UGPB_SHIDS  (Q32AT3), UGPB_SHIF8  (Q0SZL9), 
UGPB_SHIFL  (Q83PU5), UGPB_YERE8  (A1JID7), UGPB_YERPA  (Q1CBH5), 
UGPB_YERPE  (Q7CKV7), UGPB_YERPN  (Q1CNC9), UGPB_YERPS  (Q66FU7), 
Y2784_BRUAB (Q578M8), Y2991_BRUA2 (Q2YKZ9), Y3748_BRUSU (Q8FVS7)
» more

UniProtKB/Swiss-Prot
False negative sequences		 53 sequences 

AGLE_RHIME  (Q9Z3R5), ARAN_BACSU  (P94528), ARAN_HALH5  (Q9KEE7), 

DASA_STRCO  (Q9K491), FUTA1_SYNY3 (P72827), FUTA2_SYNY3 (Q55835), 
GABBP_PSEAE (Q9I6R6), GANS_BACSU  (O07009), GLCS_SACS2  (Q97UZ1), 
IDIA_SYNE7  (Q31L64), IDIA_SYNP6  (Q5N0R0), IDIA_THEVB  (Q8DLH9), 
LACE_RHIRD  (P29822), LPQY_MYCT3  (G7CES0), LPQY_MYCTO  (P9WGU8), 
LPQY_MYCTU  (P9WGU9), MANBP_PSEAE (Q9I1E0), MDXE_BACSU  (O06989), 
MELE_BACSU  (O34335), NGCE_STRCO  (O50499), P5217_PSEAE (Q9HTX3), 
PAGBP_PSEAE (Q9I0P5), PCABP_PSEAE (Q9HY16), PHND_MYCS2  (A0QQ71), 
PHNS_SALCH  (Q57SD5), PHNS_SALPA  (Q5PFQ8), PHNS_SALTI  (Q8Z8W7), 
PHNS_SALTY  (P96062), SBP92_STRPN (A0A0H2UMY0), SP39_BRUAB  (O06875), 
SP39_BRUME  (Q8YCE2), SP39_BRUSU  (Q8FVX5), SP39_RHILO  (Q98H33), 
SP39_RHIME  (Q92KZ7), THIB_BRUA2  (Q2YLW8), THIB_BRUAB  (Q57BC4), 
THIB_BRUME  (Q8YJ02), THIB_BRUSU  (Q8FYV1), UE38_DEIRA  (Q9RUE8), 
UGPB_AGRFC  (Q8UB32), UGPB_BRUA2  (Q2YKR5), UGPB_BRUAB  (Q578E6), 
UGPB_BRUME  (Q8YCA7), UGPB_BRUSU  (Q8FW10), UGPB_RHIME  (Q926H8), 
XACG_HALVD  (D4GP35), Y1039_PYRHO (O58758), Y1214_PYRHO (O58969), 
Y4OP_SINFN  (P55601), YCJN_ECOLI  (P76042), YESO_BACSU  (O31518), 
YTCQ_BACSU  (Q795R2), YURO_BACSU  (O32156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

MALE_KLEPN  (Q05564), MALE_PHOLU  (P41130)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			13 sequences
			


			
EPTA_HELPY  (O24867), FIB37_BPK3  (Q38394), HEM1_GEOKA  (Q5KWK4), 

			
HEM1_GEOTN  (A4IRG7), HEM1_SOLUE  (Q022E5), HUM6_CAEBR  (Q622K8), 
MYO7A_AEDAE (Q17LW0), MYO7A_DROME (Q9V3Z6), MYO7A_DROPS (Q29P71), 
RT29_BOVIN  (P82922), SMIP4_MOUSE (Q9D5Y0), TINCR_HUMAN (A0A2R8Y7D0), 
VATB_HYPBU  (A2BKX5)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			439 PDB
			


			1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 
			
				1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 
				1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 
				1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 
				1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2MV0; 2N44; 2N45; 2NVU; 2O68; 2O69; 2O6A; 
				2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 
				3CSB; 3CSG; 3D4C; 3D4G; 3DM0; 3EF7; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 
				3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3J9P; 
				3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 
				3N93; 3N94; 3N95; 3N96; 3O3U; 3OAI; 3OB4; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 
				3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 
				3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 
				3VFJ; 3W15; 3WAI; 3WOA; 4AQ4; 4B3N; 4BL8; 4BL9; 4BLA; 4BLB; 4BLD; 4DXB; 
				4DXC; 4EDQ; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4IFP; 4IKM; 
				4IRL; 4JBZ; 4JKM; 4KEG; 4KHZ; 4KI0; 4KV3; 4KYC; 4KYD; 4KYE; 4LOG; 4MBP; 
				4MY2; 4N4X; 4NDZ; 4NUF; 4O2X; 4OGM; 4PE2; 4PQK; 4QSZ; 4QVH; 4R0Y; 4RG5; 
				4RWF; 4RWG; 4TSM; 4WGI; 4WJV; 4WMS; 4WMT; 4WMU; 4WMV; 4WMW; 4WMX; 4WRN; 
				4WTH; 4WVG; 4WVH; 4WVI; 4WVJ; 4XA2; 4XAI; 4XAJ; 4XHS; 4XR8; 4XZS; 4XZV; 
				4YS9; 5AQ9; 5AZ6; 5AZ7; 5AZ8; 5AZ9; 5AZA; 5B3W; 5B3X; 5B3Y; 5B3Z; 5BJZ; 
				5BK1; 5BK2; 5BMY; 5C7R; 5CBN; 5CFV; 5CL1; 5DFM; 5DIS; 5E24; 5E7U; 5EDU; 
				5FIO; 5FSG; 5GPP; 5GPQ; 5GRU; 5GS2; 5GXT; 5GXV; 5H7N; 5H7Q; 5HZ7; 5HZV; 
				5HZW; 5I04; 5I69; 5IHJ; 5II5; 5IIC; 5IQZ; 5JJ4; 5JON; 5JST; 5LDF; 5LEL; 
				5LEM; 5LOF; 5M13; 5M14; 5M15; 5MM3; 5OSQ; 5T03; 5T05; 5T0A; 5TTD; 5V6Y; 
				5VAW; 5W0R; 5W0U; 5W0Z; 5W1C; 5WPZ; 5WQ6; 5Y2G; 5YGP; 5YGS; 5Z0R; 5Z0V; 
				5ZCA; 5ZNY; 5ZNZ; 6ANV; 6APX; 6BUZ; 6CXS; 6D1U; 6D65; 6D66; 6D67; 6DD5; 
				6DKS; 6DM8; 6EG2; 6EG3; 6EQZ; 6HD8; 6HD9; 6HDA; 6HDB; 6HDC; 6I4Y; 6K7D; 
				6K7E; 6K7F; 6KEA; 6KI0; 6KXG; 6L0Z; 6L3E; 6LES; 6LF3; 6M4V; 6M4W; 6N84; 
				6N85; 6NDJ; 6OB5; 6P6W; 6QGD; 6QUG; 6QXJ; 6QYK; 6QYL; 6QYN; 6QYO; 6QZ7; 
				6SIV; 6SJA; 6SLM; 6SMV; 6SWR; 6TZC; 6USM; 6V2E; 6VLS; 6WBH; 6WBJ; 6WGZ; 
				6X84; 6XDS; 6XRX; 6YBJ; 6YBK; 6YBL; 6YSN; 6ZHO; 7B01; 7BG0; 7BXT; 7BY0; 
				7CY4; 7CY5; 7CY6; 7CY7; 7CY8; 7DD9; 7DDE; 7E29; 7FBB; 7FBC; 7FBD; 7FFT; 
				7FFW; 7JHG; 7JHH; 7JIJ; 7JTR; 7K48; 7KD4; 7M74; 7MHW; 7MK7; 7MN5; 7MN6; 
				7MN8; 7MQ6; 7MQ7; 7NZM; 7O2W; 7OMM; 7OMT; 7P0F; 7P0I; 7P1G; 7P1H; 7RJ5; 
				7RW6; 7T31; 7TSZ; 7TT0; 7TT1; 7TT2; 7TT3; 7TT4; 7TT5; 7TT6; 7TT7; 7UAJ; 
				7VGQ; 7VH1; 7VQO; 7W3Z; 7W40; 7WR3; 7XQC; 7Y5Q; 7Z7H; 8AG0; 8AX5; 8AX6; 
				8AX7; 8AX8; 8AX9; 8C8F; 8CR9; 8CRB; 8DX4; 8EKX; 8EL0; 8EL1; 8FNE; 8FV5; 
				8G8W; 8H68; 8HGH; 8HLB; 8SOJ; 8SOK; 8T2I
			
			

			» more