Swiss Institute of Bioinformatics

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SWISS-2DPAGE contains data on proteins identified on various 2-D PAGE and SDS-PAGE reference maps. You can locate these proteins on the 2-D PAGE maps or display the region of a 2-D PAGE map where one might expect to find a protein from UniProtKB/Swiss-Prot [More details / References / Linking to SWISS-2DPAGE / Commercial users / Disclaimer].

Release 18.6, September 2006 and updates up to 31-January-2008 (contains 1265 entries in 36 reference maps from human, mouse, Arabidopsis thaliana, Dictyostelium discoideum, Escherichia coli, Saccharomyces cerevisiae, and Staphylococcus aureus (N315)).

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Access to SWISS-2DPAGE	SWISS-2DPAGE documents
by description (any word in the ID, DE, GN and KW lines) by accession number (AC lines) by clicking on a spot: select one of our 2-D PAGE or SDS-PAGE reference maps, click on a spot and then get the corresponding information from the SWISS-2DPAGE database. by author (RA lines) by spot serial number (2D and 1D lines) by experimental pI/Mw range by experimental identification methods by full text search retrieve all the protein entries identified on a given reference map complex queries (SRS like) compute estimated location on reference maps for a user-entered sequence	User manual Release notes (September 26, 2006) FAQ (Frequently Asked Questions about SWISS-2DPAGE) Protocols: Technical information about 2-D PAGE (IPG's, silver staining, protocols, etc) High performance 2-D gel comparison Figure captions of SWISS-2DPAGE maps available from publications: Human CSF, ELC, HEPG2, HEPG2SP, LIVER, LYMPHOMA, PLASMA, PLATELET, RBC, U937, CEC, KIDNEY. Dictyostelium discoideum, Escherichia coli, Saccharomyces cerevisiae.
Services	Software
Downloading SWISS-2DPAGE by FTP Proteomics Core Facility - Get your 2-D Gels performed according to Swiss standards 2-D PAGE museum - gels run by trainees during the 2-D PAGE courses	ImageMaster / Melanie - Software package for 2-D PAGE analysis Make2D-DB package ver 2.50 - A package preparing the data and the programs necessary to build a federated 2-DE database on one's own web site.

Gateways to other 2-D PAGE related servers and services

The World-2DPAGE Constellation - Promote and publish gel-based proteomics data through the ExPASy server WORLD-2DPAGE List - Index to other Federated 2-D PAGE databases World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases World-2DPAGE Repository - A public standards-compliant repository for gel-based proteomics data published in the literature 2D Hunt - 2-D electrophoresis web site finder Proteomics tools

Last modified 17/Mar/2008 by CHH