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Fill in one of the following sections A) Sequence/Pattern based search or B) Keyword based search

A) Sequence/Pattern based search

If you enter a UniProtKB/Swiss-Prot ID or AC number or your own protein sequence, Swiss-Shop will perform, at each biweekly update of UniProtKB/Swiss-Prot, a BLAST alignment of your sequence against the sequences that have been added in UniProtKB/Swiss-Prot since the last biweekly update. You will receive an email message with the list of new sequences thus found to be similar to your specified protein (with a probability below a user-specified threshold that the similarity found through BLAST is a random one).
If you enter a PROSITE ID or AC or your own pattern in PROSITE format, Swiss-Shop will scan this pattern, at each biweekly update of UniProtKB/Swiss-Prot, against the sequences that have been added in UniProtKB/Swiss-Prot since the last biweekly update. You will receive the list of new UniProtKB/Swiss-Prot entries matching your pattern.

B) Keyword based search

Alternatively, you can base your search on one or more keywords. Swiss-Shop will look for these keywords on the corresponding lines of all UniProtKB/Swiss-Prot entries added in the database since the last biweekly release.

A) Sequence or Pattern based search:

UniProtKB/Swiss-Prot ID or AC number:  Example / User manual
OR
PROSITE ID or AC number   :  Examples and list of all PROSITE patterns
OR
Pattern in PROSITE format : Example


OR
Raw Protein Sequence (numbers and spaces will be ignored):

Swiss-Shop will perform a BLAST alignment for your sequence, and you will receive all proteins, for which the probability that the alignment is real and not random, is below this threshold. (This probability is the value that appears in the 'P(N)' column of the BLAST output.)

B) Keyword based search:

Taxonomy (Word search on the OS, OG and OC lines of UniProtKB/Swiss-Prot):

OR OR

AND

Author (Word search on the RA lines of UniProtKB/Swiss-Prot):

OR OR

AND

Keyword (Word search on the DE, CC, and KW lines of UniProtKB/Swiss-Prot):

OR OR OR OR OR OR OR OR

AND

Cross-reference to a database (in the DR lines of UniProtKB/Swiss-Prot):

2DBase-EcoliAGDANU-2DPAGEArachnoServerArrayExpressBgeeBindingDBBioCycBRENDABuruListCAZyCGDCleanExCOMPLUYEAST-2DPAGECornea-2DPAGECTDCYGDdbSNPdictyBaseDIPDisProtDOSAC-COBS-2DPAGEDrugBankEchoBASEEcoGeneeggNOGEMBLEnsemblEnsemblBacteriaEnsemblFungiEnsemblMetazoaEnsemblPlantsEnsemblProtistseuHCVdbFlyBaseGene3DGeneCardsGeneDB_SpombeGeneFarmGeneIDGenevestigatorGenomeReviewsGermOnlineGlycoSuiteDBGOGrameneH-InvDBHAMAPHGNCHOGENOMHOVERGENHPAHSC-2DPAGEHSSPInParanoidIntActInterProIPIKEGGLegioListLepromaListiListMaizeGDBMEROPSMGIMIMMypuListNextBioNMPDROGPOMAOrphanetOrthoDBPANTHERPathway_Interaction_DBPDBPDBsumPeptideAtlasPeroxiBasePfamPharmGKBPHCI-2DPAGEPhosphoSitePhosSitePhotoListPhylomeDBPIRPIRSFPMAP-CutDBPMMA-2DPAGEPptaseDBPRIDEPRINTSProDomProMEXPROSITEPseudoCAPRat-heart-2DPAGEReactomeREBASERefSeqREPRODUCTION-2DPAGERGDSagaListSGDSiena-2DPAGESMARTSMRSTRINGSubtiListSWISS-2DPAGETAIRTCDBTIGRTIGRFAMsTubercuListUniGeneVectorBaseWorld-2DPAGEWormBaseWormPepXenbaseZFINAarhus/Ghent-2DPAGEECO2DBASEUCSC

Feature (FT lines of UniProtKB/Swiss-Prot):

ACT_SITE CA_BIND CARBOHYD CROSSLNK DISULFID HELIX PROPEP SIGNAL VARIANT MUTAGEN STRAND TRANSMEM LIPID THIOLEST TURN TRANSIT VARSPLIC

 BINDING    Text: 
 DOMAIN     Text: 
 METAL      Text: 
 MOD_RES    Text: 
 REPEAT     Text: 
 SITE       Text: 
 DNA_BIND   Text: 
 ZN_FING    Text: 
 NP_BIND    Text: 

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Report format options:

Please specify in what format (degree of detail) you wish to receive information about new UniProtKB/Swiss-Prot entries relevant to your query:
Complete UniProtKB/Swiss-Prot entries
List of UniProtKB/Swiss-Prot accession numbers
Short report containing information from UniProtKB/Swiss-Prot ID, AC, DE, OS lines
List of UniProtKB/Swiss-Prot accession numbers with hypertext links to the corresponding entries on the ExPASy WWW server

Send an email report

only when there are new UniProtKB/Swiss-Prot entries matching your query
every time Swiss-Shop is run, even if there are no new UniProtKB/Swiss-Prot entries matching your query

Expiration date of your request:

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Password (optional): (case insensitive)
The input of a password allows you to edit your request later. This can be useful if you want to avoid retyping all your data when changing a parameter of your search.

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