Flaviviridae

Molecular biology

VIRION

Enveloped, spherical, about 50 nm in diameter.

GENOME

Monopartite, linear, ssRNA(+) genome of about 10-12 kb. The virion RNA is infectious and serves as both the genome and the viral messenger RNA.

GENE EXPRESSION

The whole genome is translated in a polyprotein, which is processed co- and posttranslationally by host and viral proteases.

REPLICATION

CYTOPLASMIC

  1. Virus attaches to host receptors and is endocytosed into vesicles in the host cell.
  2. Fusion of virus membrane with the vesicle membrane; RNA genome is released into the cytoplasm.
  3. The positive-sense genomic ssRNA is translated into a polyprotein, which is cleaved into all structural and non structural proteins.
  4. Replication takes place at the surface of endoplasmic reticulum. A negative-sense complementary ssRNA is synthesized using the genomic RNA as a template.
  5. New genomic RNA is synthesized using the negative-sense RNA as a template.
  6. Virus assembly occurs at the endoplasmic reticulum. The virion buds at the endoplasmic reticulum, is transported to the Golgi apparatus, and then bud from the cell membrane.

Matching UniProtKB/Swiss-Prot entries

81 entries grouped by protein (reorder by species)

All proteins are shown (view only 76 complete proteome entries)

F protein (Frameshifted protein) (Alternate reading frame protein/F-protein) (ARFP/F) (p16) (p17)

Select_all Deselect_all  
F_HCV1Hepatitis C virus genotype 1a (isolate 1) (HCV)
F_HCVHHepatitis C virus genotype 1a (isolate H) (HCV)

Genome polyprotein

Select_all Deselect_all  
POLG_BVDVNBovine viral diarrhea virus (isolate NADL) (BVDV) (Mucosal disease virus)
POLG_BVDVCBovine viral diarrhea virus (strain CP7) (BVDV) (Mucosal disease virus)
POLG_BVDVSBovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)
POLG_CSFVAClassical swine fever virus (strain Alfort) (CSFV) (Hog cholera virus)
POLG_CSFVBClassical swine fever virus (strain Brescia) (CSFV) (Hog cholera virus)
POLG_DEN1BDengue virus type 1 (strain Brazil/97-11/1997) (DENV-1)
POLG_DEN1WDengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1)
POLG_DEN1SDengue virus type 1 (strain Singapore/S275/1990) (DENV-1)
POLG_DEN28Dengue virus type 2 (isolate Thailand/0168/1979) (DENV-2)
POLG_DEN27Dengue virus type 2 (strain 16681-PDK53) (DENV-2)
POLG_DEN2JDengue virus type 2 (strain Jamaica/1409/1983) (DENV-2)
POLG_DEN2QDengue virus type 2 (strain Peru/IQT2913/1996) (DENV-2)
POLG_DEN2PDengue virus type 2 (strain Puerto Rico/PR159-S1/1969) (DENV-2)
POLG_DEN26Dengue virus type 2 (strain Thailand/16681/1984) (DENV-2)
POLG_DEN2NDengue virus type 2 (strain Thailand/NGS-C/1944) (DENV-2)
POLG_DEN3CDengue virus type 3 (strain China/80-2/1980) (DENV-3)
POLG_DEN3MDengue virus type 3 (strain Martinique/1243/1999) (DENV-3)
POLG_DEN3PDengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
POLG_DEN3IDengue virus type 3 (strain Singapore/8120/1995) (DENV-3)
POLG_DEN3SDengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)
POLG_DEN4DDengue virus type 4 (strain Dominica/814669/1981) (DENV-4)
POLG_DEN4PDengue virus type 4 (strain Philippines/H241/1956) (DENV-4)
POLG_DEN4SDengue virus type 4 (strain Singapore/8976/1995) (DENV-4)
POLG_DEN4TDengue virus type 4 (strain Thailand/0348/1991) (DENV-4)
POLG_DEN4HDengue virus type 4 (strain Thailand/0476/1997) (DENV-4)
POLG_HCV1Hepatitis C virus genotype 1a (isolate 1) (HCV)
POLG_HCVHHepatitis C virus genotype 1a (isolate H) (HCV)
POLG_HCVBKHepatitis C virus genotype 1b (isolate BK) (HCV)
POLG_HCVCOHepatitis C virus genotype 1b (isolate Con1) (HCV)
POLG_HCVJ1Hepatitis C virus genotype 1b (isolate HC-J1) (HCV)
POLG_HCVJTHepatitis C virus genotype 1b (isolate HC-JT) (HCV)
POLG_HCVR6Hepatitis C virus genotype 1b (isolate HCR6) (HCV)
POLG_HCVJAHepatitis C virus genotype 1b (isolate Japanese) (HCV)
POLG_HCVTWHepatitis C virus genotype 1b (isolate Taiwan) (HCV)
POLG_HCVJ4Hepatitis C virus genotype 1b (strain HC-J4) (HCV)
POLG_HCVH9Hepatitis C virus genotype 1c (isolate HC-G9) (HCV)
POLG_HCVINHepatitis C virus genotype 1c (isolate India) (HCV)
POLG_HCVJ6Hepatitis C virus genotype 2a (isolate HC-J6) (HCV)
POLG_HCVJFHepatitis C virus genotype 2a (isolate JFH-1) (HCV)
POLG_HCVJ8Hepatitis C virus genotype 2b (isolate HC-J8) (HCV)
POLG_HCVJPHepatitis C virus genotype 2b (isolate JPUT971017) (HCV)
POLG_HCVBBHepatitis C virus genotype 2c (isolate BEBE1) (HCV)
POLG_HCVVAHepatitis C virus genotype 2k (isolate VAT96) (HCV)
POLG_HCVNZHepatitis C virus genotype 3a (isolate NZL1) (HCV)
POLG_HCVK3Hepatitis C virus genotype 3a (isolate k3a) (HCV)
POLG_HCVTRHepatitis C virus genotype 3b (isolate Tr-Kj) (HCV)
POLG_HCVJKHepatitis C virus genotype 3k (isolate JK049) (HCV)
POLG_HCVEDHepatitis C virus genotype 4a (isolate ED43) (HCV)
POLG_HCVEVHepatitis C virus genotype 5a (isolate EUH1480) (HCV)
POLG_HCVSAHepatitis C virus genotype 5a (isolate SA13) (HCV)
POLG_HCV6AHepatitis C virus genotype 6a (isolate 6a33) (HCV)
POLG_HCVEUHepatitis C virus genotype 6a (isolate EUHK2) (HCV)
POLG_HCVT5Hepatitis C virus genotype 6b (isolate Th580) (HCV)
POLG_HCVVNHepatitis C virus genotype 6d (isolate VN235) (HCV)
POLG_HCVJLHepatitis C virus genotype 6g (isolate JK046) (HCV)
POLG_HCVVPHepatitis C virus genotype 6h (isolate VN004) (HCV)
POLG_HCVVOHepatitis C virus genotype 6k (isolate VN405) (HCV)
POLG_GBVBHepatitis GB virus B (GBV-B) (GB virus B)
POLG_JAEVJJapanese encephalitis virus (strain Jaoars982)
POLG_JAEV5Japanese encephalitis virus (strain SA(v))
POLG_JAEV1Japanese encephalitis virus (strain SA-14)
POLG_KUNJMKunjin virus (strain MRM61C)
POLG_LANVTLangat virus (strain TP21)
POLG_MCFAMosquito cell fusing agent (CFA flavivirus)
POLG_MVEV5Murray valley encephalitis virus (strain MVE-1-51) (MVEV)
POLG_TBEVHTick-borne encephalitis virus (strain Hypr) (TBEV)
POLG_TBEVWTick-borne encephalitis virus European subtype (strain Neudoerfl) (NEUV) ...
POLG_TBEVSTick-borne encephalitis virus Far Eastern subtype (strain Sofjin) (SOFV) ...
POLG_POWVLTick-borne powassan virus (strain LB) (POWV) (Powassan virus)
POLG_WNVWest Nile virus (WNV)
POLG_YEFVNYellow fever virus (isolate Angola/14FA/1971) (YFV)
POLG_YEFVEYellow fever virus (isolate Ethiopia/Couma/1961) (YFV)
POLG_YEFVCYellow fever virus (isolate Ivory Coast/1999) (YFV)
POLG_YEFVIYellow fever virus (isolate Ivory Coast/85-82H/1982) (YFV)
POLG_YEFVUYellow fever virus (isolate Uganda/A7094A4/1948) (YFV)
POLG_YEFV1Yellow fever virus (strain 17D vaccine) (YFV)
POLG_YEFVFYellow fever virus (strain French neurotropic vaccine FNV) (YFV)
POLG_YEFVAYellow fever virus (strain Ghana/Asibi/1927) (YFV)
POLG_YEFVTYellow fever virus (strain Trinidad/TRINID79A/1979) (YFV)