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- Genomics
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- Software tool
MADAP
Clustering tool of genomic sites
SwissRegulon Portal
- Genes & Genomes
- Evolution & Phylogeny
- Systems Biology
- Database
- Software tool
The SwissRegulon Portal is the portal for regulatory genomics, including genome-wide annotations of regulatory sites and motifs, the web server ISMARA for automated inference of regulatory networks and CRUNCH for automated analysis of ChIPseq data, and REALPHY for reconstructing phylogenies from raw sequence data.
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ChIP-Seq
ChIP-Seq data analysis tools-
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- Transcriptomics
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CRUNCH
Automated pipe-line for ChIP-seq data analysis-
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- Genomics
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- Systems Biology
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ISMARA
Webservice for gene expression and epigenetic data analysis-
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CREMA
CREMA: Cis-Regulatory Element Motif Activities-
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DWT-online
Dinucleotide Weight Tensor toolbox and visualisation service-
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Phylogibbs
Regulatory sites in a collection of DNA sequences-
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QuasR
Quantification and analysis of Short Reads-